Function to overlay confidence intervals on the current plot.
overlayci.Rd
Overlays confidence intervals on the current plot. Also draws a right hand axis, a horizontal broken line at zero, and marks the significant comparisons with an arrow, i.e. the CIs that do not intersect zero.
Usage
overlayCI(cis, xpos=NULL,ci.cols = NULL, ci.ex = 2, ci.ocol = "grey40",
p.col = "grey40", pch = 1, sig.col = "red", sig.lwd = 1, yusr = NULL,
ci.label="Differences",ci.cex=0.5,arrow.length=0.1,...)
Arguments
- cis
A matrix containing the confidence intervals. Each row corresponds to a different comparison, the first column is the estimated mean, and succesive pairs of columns give the lower and upper limits for different confidence levels.
- ci.cols
A vector of colours, one colour for each confidence level. Defaults to shades of grey.
- ci.ex
Controls confidence interval line width.
- xpos
Horizonal positions where CIs are drawn. Defaults to 1.5,2.5,3.5,..
- ci.ocol
Colour of zero line.
- p.col
Colour of point used for CI centre.
- pch
Symbol used for CI centre.
- sig.col
Colour of arrow marking significant comparisons.
- sig.lwd
Width of arrow marking significant comparisons.
- yusr
Specifies the vertical
par(usr)
.Defaults to max and min.- ci.label
Label drawn on right margin.
- ci.cex
Controls size of CI mean point symbol.
- arrow.length
Controls size arrow at right hand axis.
- ...
Ignored
References
see overview
See also
See Also as mc_plot